This is a quick over view of enhancements and suggestions that get, well, suggested on a very regular basis. Hopefully this will help people focus their suggestions to aspects that may not have been covered yet, and save Keith from having to retype similar answers repeatedly.
I hope this gets a sticky

Annotation/Footnote Enhancements
"2.0, and not before. Smile The only real thing I want to add to this is to have them collapsible. This is very complicated and would be a massive undertaking, though, so won't happen in the near future. "
PDF Editing
"this is already possible. Select a PDF document in the binder and hit ctrl-cmd-O to open it in Preview. You can then edit the PDF document inside Preview, save it, and return to Scrivener (you will have to reload the PDF document in Scrivener by selecting something else in the binder and going back to it in order to see the changes). Scrivener will never have PDF editing abilities built in, though. " - Scrivener is never intended to replace dedicated applications for things like pdfs and media files.
Advanced Search
"the current search is more than adequate for most purposes. There will no major changes to this in 1.x updates. "
Sente/Endnote/Bookends Integration
"would love to do something about this, but as of yet I have no idea what. This is a future thing."
Add to Scrivener Bookmarklet
"if I had any clue about how to do it, I would. " - i.e. research is in progress!
I will go through and add statuses to each one as time goes on. Please feel free to point out commonly occuring suggestions so I can add them and the Keith Verdict/comments!